Bioinformatics

Scientists Publish Most Complete Database to Date of Human Phosphatases and Their Substrates

Heidelberg, Hinxton, Hamburg (Scicasts) – Although we know the tool’s general purpose, it can sometimes be difficult to tell if a specific pair of precision tweezers belongs to a surgeon or a master jeweller. It is now easier to solve similar conundrums about a type of protein that allows cells to react to their environment, thanks to scientists at the European Molecular Biology Laboratory (EMBL).

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Research Shows How Villain Stomach Bug May Help Control Diabetes

Blacksburg, VA (Scicasts) – A stomach bacterium believed to cause health problems such as gastritis, ulcers, and gastric cancer may play a dual role by balancing the stomach's ecosystem and controlling body weight and glucose tolerance, according to immunologists at the Virginia Bioinformatics Institute of Virginia Tech.

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Researchers Make DNA Storage a Reality

Hinxton, UK (Scicasts) – Researchers at the EMBL-European Bioinformatics Institute (EMBL-EBI) have created a way to store data in the form of DNA – a material that lasts for tens of thousands of years. The new method makes it possible to store at least 100 million hours of high-definition video in about a cup of DNA.

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New Method Identifies Genes That Can Predict Prognoses of Cancer Patients

Boston, MA (Scicasts) – In recent years, it has been thought that select sets of genes might reveal cancer patients' prognoses. However, a study published last year examining breast cancer cases found that most of these "prognostic signatures" were no more accurate than random gene sets in determining cancer prognoses.

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Computer Scientists Develop New Way to Study Molecular Networks

Blacksburg, VA (Scicasts) –  In biology, molecules can have multi-way interactions within cells, and until recently, computational analysis of these links has been "incomplete," according to T. M. Murali, associate professor of computer science in the College of Engineering at Virginia Tech.

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New Method to Diagnose Hereditary Breast and Ovarian Cancer Developed

Barcelona, Spain (Scicasts) – Researchers of the Catalan Institute of Oncology (ICO) at the Bellvitge Biomedical Research Institute (IDIBELL) have developed and validated a new method to diagnose hereditary breast and ovarian cancer syndrome based on mass sequencing of BRCA1 and BRCA2 genes. The model is based on a genetic and bioinformatic analysis which has been proved very effective.

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Computer Model Helps Researchers Hunt Out Cancer-causing Mutational Signatures in the Genome

Hinxton, UK (Scicasts) – Researchers from the Wellcome Trust Sanger Institute's cancer genome project have developed a computer model to identify the fingerprints of DNA-damaging processes that drive cancer development. Armed with these signatures, scientists will be able to search for the chemicals, biological pathways and environmental agents responsible.

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A program developed at Rice University details stable forms of collagen proteins for synthesis in the lab. The ability to synthesize custom collagen could lead to better drug design and treatment of disease. The colored portion of the molecule in this illustration shows positively charged lysine and negatively charged aspartate interacting in the required axial geometry that stabilizes the triple helix.  Image: Hartgerink Lab/Rice University

Scientists Encode Collagen

Houston, TX (Scicasts) – The human body is proficient at making collagen. And human laboratories are getting better at it all the time.

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CLC bio Acquires Molegro

Aarhus, Denmark (Scicasts) –  CLC bio has announced the acquisition of Molegro, a specialized software company focusing on molecular docking, including prediction and analysis of protein-ligand interactions, screening of compound databases for activities against a receptor, and determination of molecule similarity.

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